Scientific Output – Publications

Patteson CV
via Google Scholar
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* denote equal contribution, + denotes undergraduate researcher from Patteson group, † denotes Patteson as corresponding author

Preprints, in preparation

  1. J.A. Comstock, M.E. Asp, F. Bahar, I. Lee, A. E. Patteson, R.D. Welch, Phenotypic similarity as a measure of functional redundancy within homologous gene families, bioRxiv.
  2. Tamayo,  Y.  Zhang, M.E. Asp, A.E. Patteson, A.M. Ardekani, A. Gopinath. Swarming bacterial fronts: Dynamics and morphology of active swarm interfaces propagating through passive frictional domains, Soft Matter (In review) bioRxiv. 
  3. S. Gupta, C.D. Santangelo, A.E. Patteson, J.M. Schwarz, How cells wrap around virus-like particles using extracellular filamentous protein structures. bioRxiv.
  4. T. Zhang, S. Ameen, S. Ghosh, K. Kim, M. Thanh, A.E. Patteson, M. Wu, J.M. Schwarz. Enhanced extracellular matrix remodeling due to embedded spheroid fluidization. bioRxiv. arXiv.
  5. L. Suprewicz, K. Fiedoruk, K. Sklodowski, M. Zakzewska, A. Walewska, P. Deptula, A. Lesiak, S. Okla, P.A. Galie, A.E. Patteson, P.A. Janmey, R. Bucki. Extracellular Vimentin is a Damage-Associated Molecular Pattern Protein Serving as an Agonist of TLR4 in Human Neutrophils. bioRxiv.
  6. N. Faiza, R. Welch, A.E. Patteson, Substrate stiffness regulates collective colony expansion of the social bacterium Myxococcus xanthus. bioRix.
  7. M. Thanh, A. Poudel, S. Amenn, R. Carroll, M. Wu, P. Soman, T. Zhang, J. Schwarz, A.E. Patteson, Vimentin promotes collective cell migration through collagen networks via increased matrix remodeling and spheroid fluidity. bioRxiv.
  8. M. Swoger, M. Thanh, F.J. Byfield, V. Dam, J. Williamson, B. Frank, H. Hehnly, D. Conway, A. E. Patteson. Vimentin molecular linkages with nesprin-3 enhance nuclear deformations by cell geometric constraints. bioRix: https://www.biorxiv.org/content/10.1101/2024.10.29.621001v1

Peer-reviewed publications

  1. F.J. Byfield, B. Eftekhari, K. Kaymak-Loveless, K. Mandal, D. Li, R.G. Wells, W. Chen, J. Brujic, G. Bergamaschi, G. J.L. Wuite, A.E. Patteson, P.A. Janmey, Metabolically intact nuclei are fluidized by the activity of the chromatin remodeling motor BRG1. (Accepted). bioRxiv.
  2. A.E. Patteson, P.A. Janmey. Rheology in the Biological Sciences. Rheology Bulletin. 93, 1 (2024): https://www.rheology.org/sor/publications/RheoBulletin/RB2024Jul.pdf
  3. S. Gupta, M. Swoger, R. Saldanha, J.M. Schwarz, A.E. Patteson†. Reorganizing chromatin based on cellular deformations.  Current Opinion in Cell Biology. 90, 102408 (2024): https://pubmed.ncbi.nlm.nih.gov/39121805/
  4. R. Saldanha, M. Ho Thanh, N. Krishnan, H. Hehnly, A.E. Patteson†, Vimentin supports cell polarization by enhancing centrosome function and microtubule acetylation. J. R. Soc. Interface.  21, 20230641 (2024). bioRxiv.
  5. F. Alisafaei, K. Mandal, R. Saldanha, M. Swoger, H. Yang, X. Shi, M. Guo, H. Hehnly, C.A. Castañeda, P.A. Janmey, A.E.  Patteson, V.B. Shenoy, Vimentin is a key regulator of cell mechanosensing through opposite actions on actomyosin and microtubule networks. Communications Biology, 7, 658 (2024). bioRxiv. 
  6. J.A. Kochanowski+ , B. Carroll, M. Asp, E, Kaputa+ , A. E. Patteson†. Bacteria colonies modify their shear and compressive mechanical properties in response to different growth substrates. ACS Applied Bio Materials, (2023) arXiv. bioRxiv. 
  7. M. Asp*, E. Caro*, R. Welch, A.E. Patteson†. Mapping Stochastic Collective Behavior Distinguishes Subtle Mutations in Social Bacteria. bioRxiv. PRX Life (2023).
  8. I.K. Berg, M. L. Currey, S. Gupta, Y. Berrada, B.V. Nguyen, M. Pho, A.E. Patteson, J.M. Schwarz, E.J. Banigan, A.D. Stephens, Transcription inhibition suppresses nuclear blebbing and rupture independently of nuclear rigidity. 136, 20. J Cell Sci (2023) bioRxiv. 
  9. S. Parvanian, L.S. Coelho-Rato, A.E. Patteson, J.E. Eriksson, Vimentin takes a hike – Emerging roles of extracellular vimentin in cancer and wound healing. Current Opinion in Cell Biology (2023). Surface Link.
  10. S. Parvanian, L.S. Coelho-Rato, J.E. Eriksson, A.E. Patteson†, The Molecular Biophysics of Extracellular Vimentin and its Role in Pathogen-Host Interactions. Current Opinion in Cell Biology, 85, 102233, (2023). Surface Link.
  11. R. Bucki†, D. Iwamoto, X. Shi, K.E. Kerr, F.J. Byfield, L. Suprewicz, K. Sklodowski, J. Sutaria, P. Misiak, A. Wilczewska, S. Ramachandran, A. Wolfe, M. Ho Thanh, E. Whalen+, A.E. Patteson†, P.A. Janmey†. Extracellular vimentin is sufficient to promote cell attachment, spreading, and motility by a mechanism involving N-acetyl glucosamine-containing structures. JBC 299,8, 104963. (2023) bioRxiv. Surface Link.
  12. D.I. Upamadi Edirisinghe, A. R. D’Souza, M. Ramezani, R.J. Carroll, Q. Chicon, C.L. Muenzel, J. Soule, M.B.B. Monroe, A.E. Patteson, O.V. Makhlynets, Antibacterial and Cytocompatible pH-Responsive Peptide Hydrogel for Wound Healing, Molecules 28 (11), 4390 (2023). Surface Link.
  13. M. Asp, M. Thanh, S. Dutta, J. Comstock, R. Welch, A.E. Patteson†, Mechanobiology as a new tool for addressing the Genotype-to-Phenotype Problem in Microbiology, Biophysics Reviews. 4, 021304 (2023). Surface Link.
  14. R. Carroll, M. Thanh, A.E. Patteson†. Dynamic remodeling of fiber networks with stiff inclusions under compressive loading. Acta Biomaterialia, 163, 106-116 (2023). bioRxiv. Surface Link.
  15. M. Asp, E. Jutzeler, J. Kochanowski+, K. Kerr, D. Song, S. Gupta, and A. E. Patteson†, A torsion-based rheometer for measuring viscoelastic material properties. The Biophysicist 3,2 (2022). bioRxiv. Surface Link.
  16. K. Pogoda, F. Byfield, P. Deptuła, M. Cieśluk, Ł. Suprewicz, K. Skłodowski, J. L. Shivers, A. van Oosten, K. Cruz, E. Tarasovetc, E.L. Grishchuk, F. C. Mackintosh, R. Bucki,  A.E. Patteson, P.A. Janmey, Unique Role of Vimentin Networks in Compression Stiffening of Cells and Protection of Nuclei from Compressive stress. Nano Letters. (2022). Surface Link.
  17. M. Asp, M. Ho, D. Germann+, R.J. Carroll, A. Franceski, R. Welch, A. Gopinath, A. E. Patteson†, Spreading rates of bacteria colonies depend on substrate stiffness and permeability. PNAS Nexus 1, pgac025 (2022) bioRxiv. Surface Link.
  18. A.E. Patteson, M. Asp, P.A. Janmey, Materials science and mechanosensitivity of living matter. Applied Physics Reviews 9, 011320 (2022). Surface Link.
    • Selected highlights: Applied Physics Reviews Featured Article
  19. N. Krishnan, M. Swoger, M. Bates, J. Freshour, P. Fioramonti, A.E. Patteson, H. Hehnly, Rab11 endosomes coordinate centrosome number and movement following mitotic exit. Life Science Alliance. 5.7 (2022) bioRxiv. Surface Link.
  20. M. Swoger, S. Gupta, E.E. Charrier, M. Bates, H. Hehnly, and A.E. Patteson†, Vimentin intermediate filaments mediate cell shape on viscoelastic substrates. ACS Applied Bio Materials. 5, 2, 552-561 (2022). bioRxiv. Surface Link.
    • Back cover
  21. Ł.Suprewicz*, M.Swoger*, S. Gupta, E. Piktel, F.J. Byfield, D.V. Iwamoto, D.A. Germann+, J. Reszeć, N. Marcińczyk, P.A. Janmey, J.M. Schwarz, R. Bucki, A.E. Patteson†, Extracellular vimentin as a target against SARS-CoV-2 host cell invasion. Small 2105640 (2021). bioRxiv. Surface Link.
    • Top Downloaded Article
  22. A. Borzou, A.E. Patteson, J.M. Schwarz, A data-driven statistical description for the hydrodynamics of active matter. New Journal of Physics 23 103004. arXiv. Surface Link.
  23. S. Gupta†, A.E. Patteson†, J.M. Schwarz†, The role of vimentin-nuclear interactions in persistent cell motility through confined spaces. New Journal of Physics. 23, 093042 (2021). arXiv. bioRxiv. Surface Link.
  24. J. Singh*, A.E. Patteson*, B.O.T. Maldonado, P.K. Purohit, and P.E. Arratia, Sedimentation and diffusion of passive particles in active bacterial baths. Soft Matter 17, 4151-4160 (2021). arXiv. Surface Link. 
  25. K. Liu, A.E. Patteson, E.J. Banigan, and J.M. Schwarz, Dynamic nuclear structure emerges from chromatin crosslinks and motors. PRL. 126, 158101 (2021). bioRxiv. arXiv. Surface Link.
    • Selected Cover Image
  26. A.E. Patteson, J. M. Schwarz, Nuclei as cytoplasmic rheometers. Biophysical Journal, 120, 1-2, (2021). Surface Link.
  27. D. Song, J. Shivers, F.C. MacKintosh, A.E. Patteson, P.A. Janmey, Cell-induced confinement effects in soft tissue mechanics. J. Appl. Physics. 129, 140901 (2021). Surface Link.
  28. Z. Ostrowska-Podhorodecka, I. Ding, W. Lee, J. Tanic, S. Abbasi, P.D. Arora, A.E. Patteson, P.A. Janmey, C.A. McCulloch, Vimentin tunes cell migration on collagen by controlling β1 integrin activation and clustering. JCB 134 (6): jcs254359 (2021). Surface Link.
  29. H. Li, T. Bague, A. Kirschner, R.W. Weisenthal, A.E. Patteson, N. Annabi, W. D. Stamer, P. S. Ganapathy, S. Herberg. A tissue-engineered human trabecular meshwork hydrogel for advanced glaucoma disease modeling. Experimental Eye Research 205, 108472 (2021). bioRxiv. Surface Link.
  30. A.E. Patteson, B.J. Carroll, D.V. Iwamoto, and P.A. Janmey. The vimentin cytoskeleton: When polymer physics meets cell biology. Physical Biology 8, 011001 (2020). arXiv. Surface Link.
  31. A.E. Patteson, A. Vahabikashi, R.D. Goldman, and P.A. Janmey. Mechanical and non-mechanical function of filamentous and non-filamentous vimentin. Bioessays, 2000078 (2020). Surface Link.
    • Selected Cover Image
    • Accompanying Video: Link here
  32. M.C. Gandikota, K. Pogoda, A. van Oosten, T.A. Engstrom, A.E. Patteson, P.A. Janmey, and J.M. Schwarz, Loops versus lines and compression stiffening of cells. Soft Matter 16, 4389-4406, (2020) arXiv. Surface Link.
  33. A.E. Patteson, K. Pogoda, F.J. Byfield, K. Mandal, Z. Ostrowska-Podhorodecka, E.E. Charrier, P.A. Galie, P. Deptula, R. Bucki, C.A. McCulloch, and P.A. Janmey, Loss of vimentin enhances cell motility through small confining spaces. Small 1903180 (2019). arXiv, bioRxiv. Surface Link.
  34. A.E. Patteson*, A. Vahabikashi*, K. Pogoda, S.A. Adam, K. Mandal, M. Kittisopikul, S. Siyagurunathan, A. Goldman, R.D. Goldman, and P.A. Janmey. Vimentin protects cells against nuclear rupture and DNA damage during migration. J. Cell Biol. 218 (12): 4079–4092 (2019). bioRxiv. Surface Link.
  35. A.S.G. van Oosten, X. Chen, L. Chin, K. Cruz, A.E. Patteson, K. Pogoda, V. Shenoy, P.A. Janmey. The emergence of tissue mechanics from the confinement of non-linear biopolymer networks by densely packed cells. Nature 573, 96-101 (2019). Surface Link.
  36. J. Yuang, P.E. Arratia, A.E. Patteson, A. Gopinath, Quenching a swarm: Effects of light exposure on collective motility in swarming Serratia marcescens. J.R. Soc. Interface, 16 (2019). bioRxiv. Surface Link.
  37. A.E. Patteson, A. Gopinath, and P.E. Arratia, The propagation of active-passive interfaces in bacterial swarms. Nature Communications, 9, 5373 (2018). arXiv, bioRxiv. Surface Link.
  38. A.E. Patteson*, A. Gopinath*, and P.E. Arratia, Active colloids in complex fluids. Current Opinion in Colloid & Interface Science, 21, 86-96 (2016). arXiv. Surface Link.
  39. A.E. Patteson, A. Gopinath, P.K. Purohit, and P.E. Arratia, Particle diffusion in active fluids is non-monotonic in size. Soft Matter, 12, 2365-2372 (2016). arXiv. Surface Link. 
  40. A.E. Patteson, A. Gopinath, M. Goulian, and P.E. Arratia, Running and tumbling with E. coli in polymeric solutions, Scientific Reports, 5, 15761 (2015). arXiv. Surface Link.
      • Selected highlights: Penn Current, Phys.org, NSF News From the Field
  41. A.E. Koser, N.C. Keim, and P.E. Arratia, Structure and dynamics of self-assembling colloidal monolayers in oscillating magnetic fields, Physical Review E, 88, 062304 (2013). arXiv. Surface Link.
  42. A.E. Koser, L. Pan, N.C. Keim, and P.E. Arratia, Measuring material relaxation and creep recovery in a microfluidic device, Lab on a Chip, 13, 1850 (2013). Surface Link.
  43. A. Richardella, D.M. Zhang, J.S. Lee, A. Koser, D.W. Rench, A.L. Yeats, B.B. Buckley, D.D. Awschalom and N. Samarth, Coherent heteroepitaxy of Bi2Se3 on GaAs (111)B, Applied Physics Letters, 97, 262104 (2010). arXiv. Surface Link.

Dissertation

Koser, Alison E. Particle, polymer and phase dynamics in living fluids. University of Pennsylvania, 2016.

Dissertations from the group

Physical insights into biological processes: From viral uptake to chromatin organization to cell motility to tissue rigidity. Sarthak Gupta, PhD thesis, Syracuse University, Physics Department (2024)

The biophysics of bacterial collective motion: Measuring responses to mechanical and genetic cues. Merrill Asp, PhD thesis, Syracuse University, Physics Department (2023)